In reply to Suncream:
I'd be inclined to go for headset mics if you can find away of getting them to stay on. As said above, lavaliers will pick loads of bumping about noise. A handheld would be better, but I doubt you'd want to run with it.
The Rode wireless go that db79 mentioned is great. It comes in a twin pack so you get two tiny wireless mics and they both connect to one receiver, so you can record both people on the same recorder. You could get a set of running headphones that stay on well, and attach a boom with the Rode lavalier (optional extra) on the end of it.
Getting a clear recording needs to be your main focus, but if there's still some noise you can do amazing stuff with noise cancelling systems in post production.
Post edited at 18:33