In reply to The Potato:
We need better location details for our unsound and dangerous guesses!
the VMO is keen on atrophy in many knee injuries so could be secondary that that muscle is tired. I would roll the top of your quads and hamstrings well and do lots of hip flexor stretching and see if that helps as well as looking at VMO, gluteal and tfl strengthening
Our local running stores physio is doing online work, that might be better for your knee in the long run.