In reply to O'Donopoo:personally If I was doing it I wouldn’t use a HR anyway. You only run for what, 20 secs, so how would you accurately measure it? Just run fast for the allotted time.
Probably best to run up a slight incline so that you are not flat out sprinting which is a good way to get injured.
btw as I understand it it doesn’t work by improving anaerobic performance per se (‘anaerobic fitness’ is a meaningless term), rather it is supposed to raise your metabolic rate.